|
|
|
Hiro Kishimoto: 01/30/2007 12:46 AM EST
|
|
Comment: |
figure 5
|
|
Action: |
Update
Closed set to 01/30/2007
Status changed from Fixed to Closed
|
|
Andreas Savva: 01/19/2007 7:20 AM EST
|
|
Comment: |
Included in draft 14 with some minor changes.
|
|
Action: |
Update
Status changed from Pending to Fixed
|
|
Donal Fellows: 12/11/2006 11:25 AM EST
|
|
Comment: |
<?xml version="1.0" encoding="UTF-8"?>
<eps:CandidateExecutionPlan
xmlns:eps="http://schemas.ggf.org/rss/2006/eps-draft"
xmlns:jsdl="http://schemas.ggf.org/jsdl/2005/11/jsdl"
xmlns:jsdl-posix="http://schemas.ggf.org/jsdl/2005/11/jsdl-posix"
xmlns:wsa="<<WS-Addressing URI>>"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
<jsdl:JobDefinition>
<jsdl:JobDescription>
<jsdl:JobIdentification>
<jsdl:JobName>Blast1</jsdl:JobName>
<jsdl:Description>Blast query number 1</jsdl:Description>
<jsdl:JobProject>BlastProject</jsdl:JobProject>
</jsdl:JobIdentification>
<jsdl:Application>
<jsdl:ApplicationName>BlastN</jsdl:ApplicationName>
<jsdl:ApplicationVersion>2.2.13</jsdl:ApplicationVersion>
<jsdl:Description>BlastN performs nucleotide similarity
searching</jsdl:Description>
<jsdl-posix:POSIXApplication>
<jsdl-posix:Executable>/usr/local/bio/bin/blast</jsdl-posix:Executable>
<jsdl-posix:Argument>-p</jsdl-posix:Argument>
<jsdl-posix:Argument>blastn</jsdl-posix:Argument>
<jsdl-posix:Argument>-d</jsdl-posix:Argument>
<jsdl-posix:Argument>/db/ncbiblast/est</jsdl-posix:Argument>
<jsdl-posix:Argument>-T</jsdl-posix:Argument>
<jsdl-posix:Argument>T</jsdl-posix:Argument>
<jsdl-posix:Input filesystemName="HOME">
sequences1.txt</jsdl-posix:Input>
<jsdl-posix:Output filesystemName="HOME">
sequences1.html</jsdl-posix:Output>
<jsdl-posix:Error filesystemName="HOME">
sequences1.err</jsdl-posix:Error>
<jsdl-posix:WorkingDirectory filesystemName="HOME">
blastqueries</jsdl-posix:WorkingDirectory>
<!--ENVIRONMENT TO BE INSERTED POST DEPLOYMENT-->
<!--Limits to be defined based on what the user is allowed-->
<jsdl-posix:UserName>csmith</jsdl-posix:UserName>
<jsdl-posix:GroupName>bio</jsdl-posix:GroupName>
</jsdl-posix:POSIXApplication>
</jsdl:Application>
<jsdl:Resources>
<!--Once the host is determined it is included here-->
<jsdl:FileSystem name="TMP">
<jsdl:FileSystemType>temporary</jsdl:FileSystemType>
<jsdl:Description>Well-known 'name' for temporary space that
does not necessarily persist after the job terminates.
</jsdl:Description>
<jsdl:DiskSpace>
<jsdl:LowerBoundedRange>10737418240.0</jsdl:LowerBoundedRange>
</jsdl:DiskSpace>
<!--Detailed setup to be provided by a CDL document.
Some values may be added here when refining.-->
</jsdl:FileSystem>
<jsdl:FileSystem name="HOME">
<jsdl:FileSystemType>normal</jsdl:FileSystemType>
<jsdl:Description>Chris's home directory</jsdl:Description>
<!--Detailed setup to be provided by a CDL document.
Some values may be added here when refining.-->
</jsdl:FileSystem>
<jsdl:FileSystem name="DB">
<jsdl:FileSystemType>normal</jsdl:FileSystemType>
<jsdl:Description>Formatted BLAST database</jsdl:Description>
<!--Detailed setup to be provided by a CDL document.
Some values may be added here when refining.-->
<jsdl:MountPoint>/db/ncbiblast</jsdl:MountPoint>
</jsdl:FileSystem>
<jsdl:ExclusiveExecution>true</jsdl:ExclusiveExecution>
<jsdl:TotalCPUCount>
<jsdl:Exact>1.0</jsdl:Exact>
</jsdl:TotalCPUCount>
</jsdl:Resources>
<jsdl:DataStaging>
<jsdl:FileName>blastqueries/sequences1.txt</jsdl:FileName>
<jsdl:FilesystemName>HOME</jsdl:FilesystemName>
<jsdl:CreationFlag>overwrite</jsdl:CreationFlag>
<jsdl:Source>
<jsdl:URI>
http://csmith.otherhost.com/blastqueries/sequences1.txt
</jsdl:URI>
</jsdl:Source>
</jsdl:DataStaging>
<jsdl:DataStaging>
<jsdl:FileName>blastqueries/sequences1.html</jsdl:FileName>
<jsdl:FilesystemName>HOME</jsdl:FilesystemName>
<jsdl:CreationFlag>overwrite</jsdl:CreationFlag>
<jsdl:Target>
<jsdl:URI>
http://csmith.otherhost.com/blastqueries/sequences1.html
</jsdl:URI>
</jsdl:Target>
</jsdl:DataStaging>
<jsdl:DataStaging>
<jsdl:FileName>blastqueries/sequences1.err</jsdl:FileName>
<jsdl:FilesystemName>HOME</jsdl:FilesystemName>
<jsdl:CreationFlag>append</jsdl:CreationFlag>
<jsdl:Target>
<jsdl:URI>
http://csmith.otherhost.com/blastqueries/sequences1.err
</jsdl:URI>
</jsdl:Target>
</jsdl:DataStaging>
</jsdl:JobDescription>
</jsdl:JobDefinition>
<eps:BESReference>
<wsa:Address>http://server.com:8000/serv/BasicExecution</wsa:Address>
<wsa:ReferenceProperties>SomeReferenceData</wsa:ReferenceProperties>
</eps:BESReference>
<eps:QualityOfService>
<eps:StartDelays>
<!-- May take up to 10 minutes to get through the queue -->
<eps:DelayRange from="0" to="600"/>
</eps:StartDelays>
<eps:ExecutionDuration>
<!-- Will take 60 to 90 seconds to actually run once started -->
<eps:RuntimeRange from="60" to="90"/>
</eps:ExecutionDuration>
</eps:QualityOfService>
<!-- Most validities would be shorter than this! -->
<eps:Validity
notBefore="2006-01-01T00:00+00:00"
notAfter="2008-12-31T23:59+00:00"/>
</eps:CandidateExecutionPlan>
|
|
Action: |
Update
|
|
|
Andreas Savva: 11/27/2006 10:18 AM EST
|
|
Action: |
Update
Status changed from Open to Pending
|
|
|